New York Mets starting pitcher Mike Pelfrey knew he threw a bad pitch to Michael Martinez, the 28-year old rookie of the NL east division leading Philadelphia Phillies. He got hold of a Pelfrey fastball in the fifth inning, a three-run shot for his first career home run.“I made a mistake, it was supposed to be fast and down,” said Pelfrey about the home run to right off a 2-0 pitch. It was enough for the Phillies to take two of three from the Mets with an 8-5 win at Citi Field Sunday afternoon. Pelfrey (5-9) went five innings, gave up four runs and the home run to Martinez was the 16th he gave up this season. When Pelfrey gives up the home run ball, as seems to be a frequent part of his game this season, the right hander has obvious control issues.“The long ball is what is killing him,” said Mets Manager Terry Collins about his ace starter. Pelfrey has assumed that role more with Johan Santana not slated to return to the rotation anytime soon. Consistency has been an issue for Pelfrey who is 0-2 and with a 9.47 ERA against the Phillies this season. “He’s our guy,” added Collins who saw Pelfrey have two other good outings this month.Martinez, in for the injured all-star third baseman Placido Polanco, would finish with a career best four RBI game. The Rule-5 pick from the Washington Nationals and native of Santo Domingo DR, said through a translator, “it was worth the wait. I am not a power hitter so I am surprised it left the yard.”But it was not just Pelfrey that continued to put the Mets further back to the Phillies in the standings, and to the Atlanta Braves in the National League wild card standings. The Mets did make a game of it scoring three runs in the eighth and one run in the ninth, but went 4-for-15 with runners in scoring position. They scored one run off Phils starter and winner Kyle Kendrick (5-4) a,nd three runs off a battered Philadelphia pen, including a run scoring triple by Lucas Duda in the ninth off closer Antonio Bastardo who got his sixth save.It is obvious, with the Phillies not throwing starters Cliff Lee and Roy Halladay, a combined 20 wins between the two, that to beat them you need to have good pitching. Pelfrey and Collins know that they have a lineup of potent hitters. “I thought the guys fought hard today,” said Collins. “We just didn’t pitch today. That was the difference. You have to hold these guys down to keep them from scoring because they have a good pitching staff.”In the three game series, New York went 4-for-20 with runners in scoring position. Part of that could be attributed to the absence of Carlos Beltran from the lineup the past two games. Beltran has been sidelined with a severe flu, and Collins said, the weakened Beltran would not be available Monday night when the Mets host the Florida Marlins in a makeup game that was postponed by rain on May 17th.Philadelphia opened the game with a three-run eighth inning when Jason Bay in left came in on a Ryan Howard liner and the ball hit off the top of his glove for an error. The Citi Field crowd booed Bay again, as he also went 0-for-4 at the plate.“I missed it,” commented Bay when asked about the play. “It’s one of those things where I missed it. And with Scott Hairston driving in another run with a pinch hit single in the seventh, hitting .375 with two home runs and 10 RBI over his last 10 games, Bay was asked if he was concerned about losing his spot in the lineup.To that Bay said, “It’s not my job, not my decision to make. Before the break started I had the momentum going.” Bay was on a streak before the all-star break and the Mets lineup seemed to click with Beltran hitting also, even without the injured Jose Reyes out of the lineup.“When you saw Jason swing the bat last week, thought he was coming out of it,” said Collins. “When we get Carlos (Beltran) back, that should help.” However Beltran left the ballpark after receiving another IV treatment for loss of fluids because of the flu, and Collins said he was almost sure the outfielder will miss another game.Leaving 11 men on base did not help. And Collins did have another chance to mix and match out of the bullpen, but did not use Bobby Parnell as the closer with the now traded Francisco Rodriguez now in Milwaukee.  One with Florida Monday night, and then three with the St. Louis Cardinals and he can only hope that Beltran returns to the lineup.NOTES: Chris Capuano (8-8) gets the start against the Marlins who came to New York Sunday night after a Sunday game in Chicago. After the game Florida will go home and play San Diego for three, and the Mets for three more…Duda with two more hits  upped his average to .328 with nine RBI in his last 19 games…Daniel Murphy with a single in the first extended his hitting streak to seven games…It was the fourth series loss for the Mets against the Phillies this season…Now the good news. Jose Reyes ran before the game and tested the injured hamstring. He is slated to start Monday afternoon for the Brooklyn Cyclones of the Penn league and if all goes well Reyes could come off the DL and start Tuesday night at Citi Field.e-mail Rich Mancuso: Ring786@aol.com